Index

_

_manager (gen3.tools.download.drs_download.Downloadable attribute)

A

access_methods (gen3.tools.download.drs_download.Downloadable attribute) ACLS (in module gen3.tools.indexing.index_manifest) async_create() (gen3.metadata.Gen3Metadata method) async_create_aliases() (gen3.metadata.Gen3Metadata method) async_create_record() (gen3.index.Gen3Index method) async_delete_alias() (gen3.metadata.Gen3Metadata method) async_delete_aliases() (gen3.metadata.Gen3Metadata method) async_download_object_manifest() (in module gen3.tools.indexing.download_manifest) async_get() (gen3.metadata.Gen3Metadata method) async_get_aliases() (gen3.metadata.Gen3Metadata method) async_get_record() (gen3.index.Gen3Index method) async_get_records_from_checksum() (gen3.index.Gen3Index method)

async_get_records_on_page() (gen3.index.Gen3Index method) async_get_with_params() (gen3.index.Gen3Index method) async_ingest_metadata_manifest() (in module gen3.tools.metadata.ingest_manifest) async_query_urls() (gen3.index.Gen3Index method) async_query_urls_from_indexd() (in module gen3.tools.metadata.ingest_manifest) async_run_job_and_wait() (gen3.jobs.Gen3Jobs method) async_update() (gen3.metadata.Gen3Metadata method) async_update_aliases() (gen3.metadata.Gen3Metadata method) async_update_record() (gen3.index.Gen3Index method) async_verify_object_manifest() (in module gen3.tools.indexing.verify_manifest) auth_provider (gen3.metadata.Gen3Metadata attribute) AUTHZ (in module gen3.tools.indexing.index_manifest)

B

batch_create() (gen3.metadata.Gen3Metadata method)

C

cache_hosts_wts_tokens() (gen3.tools.download.drs_download.DownloadManager method) children (gen3.tools.download.drs_download.Downloadable attribute) COLUMN_TO_USE_AS_GUID (in module gen3.tools.metadata.ingest_manifest) commons_url (gen3.tools.download.drs_download.Manifest attribute) copy() (gen3.wss.Gen3WsStorage method) create() (gen3.metadata.Gen3Metadata method) create_aliases() (gen3.metadata.Gen3Metadata method) create_blank() (gen3.index.Gen3Index method) create_index_key_path() (gen3.metadata.Gen3Metadata method) create_job() (gen3.jobs.Gen3Jobs method)

create_new_version() (gen3.index.Gen3Index method) create_object_list() (gen3.tools.download.drs_download.Manifest static method) create_program() (gen3.submission.Gen3Submission method) create_project() (gen3.submission.Gen3Submission method) create_record() (gen3.index.Gen3Index method) created_time (gen3.tools.download.drs_download.Downloadable attribute) curl() (gen3.auth.Gen3Auth method) CURRENT_DIR (in module gen3.tools.indexing.download_manifest) (in module gen3.tools.indexing.index_manifest) (in module gen3.tools.indexing.verify_manifest)

D

delete() (gen3.metadata.Gen3Metadata method) delete_alias() (gen3.metadata.Gen3Metadata method) delete_aliases() (gen3.metadata.Gen3Metadata method) delete_all_guids() (in module gen3.tools.indexing.index_manifest) delete_file() (gen3.file.Gen3File method) delete_file_locations() (gen3.file.Gen3File method) delete_index_key_path() (gen3.metadata.Gen3Metadata method) delete_node() (gen3.submission.Gen3Submission method) delete_nodes() (gen3.submission.Gen3Submission method) delete_object() (gen3.object.Gen3Object method) delete_program() (gen3.submission.Gen3Submission method) delete_project() (gen3.submission.Gen3Submission method)

delete_record() (gen3.index.Gen3Index method) (gen3.submission.Gen3Submission method) delete_records() (gen3.submission.Gen3Submission method) download() (gen3.tools.download.drs_download.Downloadable method) (gen3.tools.download.drs_download.DownloadManager method) (gen3.wss.Gen3WsStorage method) download_files_in_drs_manifest() (in module gen3.tools.download.drs_download) download_single() (gen3.file.Gen3File method) download_url() (gen3.wss.Gen3WsStorage method) Downloadable (class in gen3.tools.download.drs_download) DownloadManager (class in gen3.tools.download.drs_download) DownloadStatus (class in gen3.tools.download.drs_download)

E

end_time (gen3.tools.download.drs_download.DownloadStatus attribute) endpoint (gen3.metadata.Gen3Metadata attribute)

export_node() (gen3.submission.Gen3Submission method) export_record() (gen3.submission.Gen3Submission method)

F

file_name (gen3.tools.download.drs_download.Downloadable attribute) (gen3.tools.download.drs_download.Manifest attribute)

file_size (gen3.tools.download.drs_download.Downloadable attribute) (gen3.tools.download.drs_download.Manifest attribute)

G

gen3.tools module gen3.tools.download.drs_download module gen3.tools.indexing.download_manifest module gen3.tools.indexing.index_manifest module gen3.tools.indexing.verify_manifest module gen3.tools.metadata.ingest_manifest module Gen3Auth (class in gen3.auth) Gen3File (class in gen3.file) Gen3Index (class in gen3.index) Gen3Jobs (class in gen3.jobs) Gen3Metadata (class in gen3.metadata) Gen3Object (class in gen3.object) Gen3Query (class in gen3.query) Gen3Submission (class in gen3.submission) Gen3WsStorage (class in gen3.wss) get() (gen3.index.Gen3Index method) (gen3.metadata.Gen3Metadata method) get_access_token() (gen3.auth.Gen3Auth method) get_access_token_from_wts() (gen3.auth.Gen3Auth method) get_aliases() (gen3.metadata.Gen3Metadata method) get_all_records() (gen3.index.Gen3Index method) get_dictionary_all() (gen3.submission.Gen3Submission method)

get_dictionary_node() (gen3.submission.Gen3Submission method) get_fresh_token() (gen3.tools.download.drs_download.DownloadManager method) get_graphql_schema() (gen3.submission.Gen3Submission method) get_guids_prefix() (gen3.index.Gen3Index method) get_index_key_paths() (gen3.metadata.Gen3Metadata method) get_latest_version() (gen3.index.Gen3Index method) get_output() (gen3.jobs.Gen3Jobs method) get_presigned_url() (gen3.file.Gen3File method) get_programs() (gen3.submission.Gen3Submission method) get_project_dictionary() (gen3.submission.Gen3Submission method) get_project_manifest() (gen3.submission.Gen3Submission method) get_projects() (gen3.submission.Gen3Submission method) get_record() (gen3.index.Gen3Index method) get_record_doc() (gen3.index.Gen3Index method) get_records() (gen3.index.Gen3Index method) get_records_on_page() (gen3.index.Gen3Index method) get_stats() (gen3.index.Gen3Index method) get_status() (gen3.jobs.Gen3Jobs method) get_urls() (gen3.index.Gen3Index method) get_valid_guids() (gen3.index.Gen3Index method) get_version() (gen3.index.Gen3Index method) (gen3.jobs.Gen3Jobs method) (gen3.metadata.Gen3Metadata method) get_versions() (gen3.index.Gen3Index method) get_with_params() (gen3.index.Gen3Index method) graphql_query() (gen3.query.Gen3Query method) GUID (in module gen3.tools.indexing.index_manifest) GUID_TYPE_FOR_INDEXED_FILE_OBJECT (in module gen3.tools.metadata.ingest_manifest) GUID_TYPE_FOR_NON_INDEXED_FILE_OBJECT (in module gen3.tools.metadata.ingest_manifest)

H

hostname (gen3.tools.download.drs_download.Downloadable attribute)

I

index_object_manifest() (in module gen3.tools.indexing.index_manifest) INDEXD_RECORD_PAGE_SIZE (in module gen3.tools.indexing.download_manifest)

is_healthy() (gen3.index.Gen3Index method) (gen3.jobs.Gen3Jobs method) (gen3.metadata.Gen3Metadata method)

L

list_access_in_drs_manifest() (in module gen3.tools.download.drs_download) list_drs_object() (in module gen3.tools.download.drs_download) list_files_in_drs_manifest() (in module gen3.tools.download.drs_download) list_jobs() (gen3.jobs.Gen3Jobs method)

load() (gen3.tools.download.drs_download.Manifest static method) load_manifest() (gen3.tools.download.drs_download.Manifest static method) ls() (gen3.wss.Gen3WsStorage method) ls_path() (gen3.wss.Gen3WsStorage method)

M

Manifest (class in gen3.tools.download.drs_download) MAX_CONCURRENT_REQUESTS (in module gen3.tools.indexing.download_manifest) (in module gen3.tools.indexing.verify_manifest) (in module gen3.tools.metadata.ingest_manifest) MD5 (in module gen3.tools.indexing.index_manifest) md5sum (gen3.tools.download.drs_download.Manifest attribute)

module gen3.tools gen3.tools.download.drs_download gen3.tools.indexing.download_manifest gen3.tools.indexing.index_manifest gen3.tools.indexing.verify_manifest gen3.tools.metadata.ingest_manifest

O

object_id (gen3.tools.download.drs_download.Downloadable attribute) (gen3.tools.download.drs_download.Manifest attribute)

object_type (gen3.tools.download.drs_download.Downloadable attribute) open_project() (gen3.submission.Gen3Submission method)

P

pprint() (gen3.tools.download.drs_download.Downloadable method)

PREV_GUID (in module gen3.tools.indexing.index_manifest)

Q

query() (gen3.metadata.Gen3Metadata method) (gen3.query.Gen3Query method) (gen3.submission.Gen3Submission method)

query_urls() (gen3.index.Gen3Index method)

R

raw_data_download() (gen3.query.Gen3Query method) refresh_access_token() (gen3.auth.Gen3Auth method)

resolve_objects() (gen3.tools.download.drs_download.DownloadManager method) rm() (gen3.wss.Gen3WsStorage method) rm_path() (gen3.wss.Gen3WsStorage method)

S

SIZE (in module gen3.tools.indexing.index_manifest) start_time (gen3.tools.download.drs_download.DownloadStatus attribute)

status (gen3.tools.download.drs_download.DownloadStatus attribute) submit_file() (gen3.submission.Gen3Submission method) submit_record() (gen3.submission.Gen3Submission method)

T

ThreadControl (class in gen3.tools.indexing.index_manifest)

TMP_FOLDER (in module gen3.tools.indexing.download_manifest)

U

update() (gen3.metadata.Gen3Metadata method) update_aliases() (gen3.metadata.Gen3Metadata method) update_blank() (gen3.index.Gen3Index method) update_record() (gen3.index.Gen3Index method) updated_time (gen3.tools.download.drs_download.Downloadable attribute)

upload() (gen3.wss.Gen3WsStorage method) upload_file() (gen3.file.Gen3File method) upload_file_to_guid() (gen3.file.Gen3File method) upload_url() (gen3.wss.Gen3WsStorage method) URLS (in module gen3.tools.indexing.index_manifest) user_access() (gen3.tools.download.drs_download.DownloadManager method)